pytometry.tools.normalize_arcsinh

pytometry.tools.normalize_arcsinh(adata, cofactor, copy=False)

Inverse hyperbolic sine transformation.

Parameters

• adata – AnnData object

• cofactor (float) – all values are divided by this factor before arcsinh transformation recommended value for cyTOF data is 5 and for flow data 150.

• copy (bool, optional) – Return a copy instead of writing to adata. Defaults to False.

Returns

Depending on copy, returns or updates adata in the following field adata.X is then a normalised adata object

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