Quickstart#
import pytometry as pm
import readfcs
import anndata
Read fcs file example from the readfcs package.
path_data = readfcs.datasets.example()
adata = pm.io.read_fcs(path_data)
assert isinstance(adata, anndata._core.anndata.AnnData)
Save data to HDF5 file format.
adata.write("example.h5ad")